2021
Oral communication
Jorge Bote, Juan Francisco Ortega-Morán, Cristina L.Saratxaga, Beatriz Moreno-Lobato, Marco Marchetti, Domenico Alfieri, Riccardo Cicchi, Francisco Miguel Sánchez-Margallo. Security tests of multi-photon components of Piccolo endoscopic system over colonic tissue.. XXIII Reunión Nacional de Cirugía 2021, 9-12 November, A Coruña (Spain).
Oral communication
Jorge Bote, Juan Francisco Ortega-Morán, Cristina L.Saratxaga, Blas Pagador, Artzai Picón, Elena Terradillos, Beatriz Moreno-Lobato, Francisco Miguel Sánchez-Margallo. Ex-vivo database of murine colorectal cancer model with Optical Coherence Tomography. XXIII Reunión Nacional de Cirugía 2021, 9-12 November, A Coruña (Spain).
Publication
Terradillos Elena, Saratxaga Cristina L, Mattana Sara, Cicchi Riccardo, Pavone Francesco S, Andraka Nagore, Glover Benjamin J, Arbide Nagore, Velasco Jacques, Etxezarraga Mª Carmen, Picon Artzai. Analysis on the characterization of multiphoton microscopy images for malignant neoplastic colon lesion detection under deep learning methods. J Pathol Inform 2021, 12(1):27. DOI: 10.4103/jpi.jpi_113_20. [Article]
Publication
Ortega-Morán JF, Azpeitia Á, Sánchez-Peralta LF, Bote-Curiel L, Pagador B, Cabezón V, Saratxaga CL, Sánchez-Margallo FM. Medical needs related to the endoscopic technology and colonoscopy for colorectal cancer diagnosis. BMC Cancer. 2021 Apr 26;21(1):467. doi: 10.1186/s12885-021-08190-z. PMID: 33902503. [Article]
Publication
Saratxaga, C.L.; Bote, J.; Ortega-Morán, J.F.; Picón, A.; Terradillos, E.; del Río, N.A.; Andraka, N.; Garrote, E.; Conde, O.M. "Characterization of Optical Coherence Tomography Images for Colon Lesion Differentiation under Deep Learning". Appl. Sci. 2021, 11, 3119. https://doi.org/10.3390/app11073119. [Article]
Publication
Artzai Picón, Alsonso Medela, Luisa F. Sánchez-Peralta, Riccardo Cicchi, Roberto Bilbao, Domenico Alfieri, Andoni Elola, Ben Glover, Cristina L. Saratxaga. "Autofluorescence Image Reconstruction and Virtual Staining for In-Vivo Optical Biopsying," in IEEE Access, vol. 9, pp. 32081-32093, 2021, doi: 10.1109/ACCESS.2021.3060926. [Article]
Oral communication
J. Bote, J. F. Ortega Morán, B. Pagador, B. Moreno Lobato, R. Cicchi, I. Costantini, C. López Saratxaga, F. M. Sánchez Margallo. Protocol for the preservation of autofluorescence in ex-vivo samples. 1er Congreso virtual SEIQ, 11-12 Marzo 2021. (To be published in British Journal of Surgery)
Oral communication
J. Bote, J. F. Ortega Morán, B. Pagador, B. Moreno Lobato, C. López Saratxaga, F. M. Sánchez Margallo. Validation of hyperplasic murine colon model. 1er Congreso virtual SEIQ, 11-12 Marzo 2021. (To be published in British Journal of Surgery)
2020
Publication
Alfonso Medela, Artzai Picon. "Constellation loss: Improving the efficiency of deep metric learning loss functions for the optimal embedding of histopathological images". Journal of Pathology Informatics, Volume 11, number 1, pages 38, 2020. doi: 10.4103/jpi.jpi_41_20. [Article]
Publication
Luisa F. Sánchez-Peralta, J. Blas Pagador, Artzai Picón, Ángel J. Calderón, Francisco Polo, Nagore Andraka, Roberto Bilbao, Benjamin Glover, Cristina L. Saratxaga ,Francisco M. Sánchez-Margallo. "PICCOLO White-Light and Narrow-Band Imaging Colonoscopic Dataset: A Performance Comparative of Models and Datasets". Applied Sciences, 10(23), 8501, 2020. https://doi.org/10.3390/app10238501. [Article]
Poster
C. Reyes, B. Corbett, J.F. Ortega Morán, J. Bote, B. Roycroft. Optical coherence tomography imaging of colorectal neoplastic polyps developed in genetically modified rats. Congreso CASEIB 2020.Virtual, 25-27 Noviembre 2020. [Abstract]
Poster
Juan Francisco Ortega-Morán, Luis Bote-Curiel, Blas Pagador, Águeda Azpeitia, Cristina L. Saratxaga, Francisco M. Sánchez-Margallo. Identifying challenges during colonoscopy procedure through the application of Latent Dirichlet Allocation (LDA) method to interviews with endoscopists. Congreso EMBEC 2020. Virtual, 29 Nov – 3 Dec 2020. [Abstract]
Publication
Luisa F.Sanchez-Peralta, Artzai Picón, Francisco M. Sanchez-Margallo, J. Blas Pagador. “Unravelling the effect of data augmentation transformations in polyp segmentations”. Int J Comput Assist Radiol Surg. 2020; 15(Suppl 1): 1–214. Published online 2020 Jun 8. doi: 10.1007/s11548-020-02171-6. [Article]
Publication
Luisa F. Sánchez-Peralta, Luis Bote-Curiel, Artzai Picón, Francisco M. Sánchez-Margallo, J. Blas Pagador. "Deep learning to find colorectal polyps in colonoscopy: A systematic literature review". Artificial Intelligence in Medicine, Volume 108, 2020, 101923, ISSN 0933-3657. https://doi.org/10.1016/j.artmed.2020.101923. [Article]
Publication
Luisa F. Sánchez-Peralta, Artzai Picón, J.A Antequera-Barroso, J.F. Ortega-Morán, Francisco M. Sánchez-Margallo; J. Blas Pagador. "Eigenloss: Combined PCA-Based Loss Function for Polyp Segmentation". Mathematics 2020, 8, 1316. [Article]
Oral communication
Sánchez Peralta L.F.; Picón A.; Sánchez Margallo F.M.; Pagador J.B. Unravelling the effect of data augmentation transformations in polyp segmentation. 34th International Congress and Exhibition Computer Assisted Surgery and Radiology (CARS2020). 23-27 Junio 2020. [Presentation]
Publication
Glover, B., Teare, J., & Patel, N. (2020). The Status of Advanced Imaging Techniques for Optical Biopsy of Colonic Polyps. Clinical and translational gastroenterology, 11(3), e00130. https://doi.org/10.14309/ctg.0000000000000130. [Article]
Poster
Reyes C., Corbett B., Roycroft B. "Large lateral scanning range fiber-based swept-source optical coherence tomography system". Biophotonics Congress: Biomedical Optics 2020 (Translational, Microscopy, OCT, OTS, BRAIN), OSA Technical Digest (Optical Society of America, 2020), paper JW3A.20. [Poster]
2019
Publication
Glover B, Teare J, Patel N. A Review of New and Emerging Techniques For Optical Diagnosis of Colonic Polyps. J Clin Gastroenterol. 2019 Aug;53(7):495-506. doi: 10.1097/MCG.0000000000001222. PMID: 31107294.
Oral communication
Ortega-Morán J.F., Bote J., Pagador B., López-Lozano M.R., Soria F., González-Sánchez J., Sánchez-Margallo F.M. “Do gastroenterologists fully rely on new photonics technologies for the diagnosis of colorectal cancer?”. XXVth Congress of the Spanish Society for Surgical Research (SEIQ). (2019). [Abstract]
Poster
Calderón A., Polo F., Azpeitia A., Ortega-Morán J.F., Sánchez-Margallo F.M., Saratxaga C. L., Solleder P., Alfieri D., Roycroft B., Bain J., Pavone F.S., Cicchi R., Teare J., Arbide N., Velasco J., Picón A. “Multimodal highly—sensitive PhotonICs endoscope for improved in-vivo COLOn Cancer diagnosis and clinical decision support- Proyecto PICCOLO”. 41th National Congress Spanish Society Digestive Endoscopy (SEED). (2019). [Poster]
Oral communication
Ortega-Morán J.F., Bote J., Pagador B., López-Lozano M.R., Soria F., González-Sánchez J., Sánchez-Margallo F.M. “Gastroenterologists’ perceptions about a new multimodal photonics endoscope for in-vivo colorectal cancer diagnosis”. International Society for Medical Innovation and Technology (iSMIT). (2019). [Abstract]
Poster
Credi C., Bocchi1 L., Picon A., Saratxaga C. L., Sánchez-Peralta L.F., Ortega J.F., Bote J., Azpeitia García A., Egia A., Glover B, Pavone F.S., and Cicchi R. “Multimodal colon cancer imaging database for disease modeling”. International Engineering in Medicine and Biology Conference (EMBC). (2019). [Poster]
Oral communication
Reyes C., Piwonski T., Corbett B., Roycroft B. “Automated heterodyne method to characterize semiconductor based akinetic swept laser sources”. International Society for Optics and Photonics, SPIE, pages 54 – 65. (2019). https://doi.org/10.1117/12.2526376 [Paper]
Poster
Bote-Chacón J., Moreno-Lobato B., Sánchez-Margallo FM. “Pilot study for the characterization of a murine model of hyperplastic growth in colon”. Int. Congr. Eur. Assoc. Endosc. Surg. (2019). [Poster]
Oral communication
Medela, A., Picon, A., L. Saratxaga, C., Belar, O., Cabezón, V., Cicchi, R., Bilbao, R. and Glover, B., “Few shot learning in histopathological images: reducing the need of labelled data on biological datasets,” IEEE Int. Symp. Biomed. Imaging (2019). [Paper]
2018
Poster
Bote-Chacón, J., Moreno_Lobato, B., Ortega Moran, J., Guillén Caro, J. and Sanchez-Margallo, F., “Feasibility study combined with diagnostic techniques of colorectal cancer such as endoscopy, solid biopsies and liquid biopsies in a murine model,” 3rd Annu. World Preclin. Congr. – Eur. (2018). [Poster]
Poster
Guillén Caro, J., Bote-Chacón, J., Ortega-Moran, J., Blas Pagador, J. and Sanchez-Margallo, F., “Pre-clinical stage to develop a multimodal highly-sensitive photonics endoscope for improved in-vivo colon cancer diagnosis and clinical decision support,” 3rd Annu. World Preclin. Congr. – Eur. (2018). [Poster]
Poster
Sanchez-Peralta, L., Bote-Curiel, L., Pagador, J., Ortega-Moran, J., Sanchez-Margallo, F. and Picon, A., “Automatic segmentation of colorectal polyps using deep learning,” XXXVI Annu. Congr. Spanish Soc. Biomed. Eng. (2018). [Poster]
Oral communication
Bote-Curiel, L., Ortega-Moran, J., Pagador, J., Sanchez-Margallo, F., Glover, B., Teare, J., Polo, F., Arbide, N., L. Saratxaga, C., Solleder, P., Alfieri, D., di Noia, F., Roycroft, B., Bain, J., Cicchi, R., Pavone, F. and Picon, A., “Innovative multiphotonic endoscope to address technological challenges in current colonoscopy procedure,” XXXVI Annu. Congr. Spanish Soc. Biomed. Eng. (2018). [Abstract]
Poster
Cabezón, V., Egia, A., Belar, O., Calderón, Á. J., Polo, F., Etxezagarra, C., Arbide, N., Velasco, J., Sanchez-Peralta, L., Glover, B., Credi, C., Cicchi, R., L. Saratxaga, C., Picon, A. and Bilbao, R., “The Basque Biobank as a bank of clinical images and associated data. PICCOLO Project,” 9th Natl. Congr. Biobanks (2018). [Poster]
Poster
Sanchez-Peralta, L., Calderón, Á. J., Cabezón, V., Ortega-Moran, J., Sanchez-Margallo, F., Polo, F., L. Saratxaga, C. and Picon, A., “Systemic acquisition and annotation of clinical cases for the generation of a medical image database,” XXIV Congr. Spanish Soc. Surg. Res. (2018). [Poster]
Oral communication
Reyes, C. and Roycroft, B., “Linear sweep of telecoms laser for OCT applications,” Photonics Irel. (2018). [Presentation]
Poster
Reyes, C. and Roycroft, B., “Linear sweep of telecoms lasers for OCT applications,” Biophotonics Imaging Grad. Summer Sch. (2018). [Poster]
Poster
Sanchez-Margallo, F., Ortega-Moran, J., Blas Pagador, J., Glover, B., Teare, J., Calderón, Á. J., Etxezagarra, C., L. Saratxaga, C. and Picon, A., “Medical needs in current colonoscopy procedures of colorectal cancer diagnosis,” Int. Congr. Eur. Assoc. Endosc. Surg. (2018). [Poster]
2017
Oral communication
Sanchez-Peralta, L., Sanchez-Margallo, F., Bote-Chacón, J., Soria Gálvez, F., L. Saratxaga, C., Picon, A. and Blas Pagador, J., “Is it necessary to improve the colorectal polyps databases for detection CAD systems based on deep learning,” XXIII Congr. Spanish Assoc. Surg. Res. (2017). [Abstract]
Oral communication
Sanchez-Margallo, F., Ortega-Moran, J., L. Saratxaga, C., Solleder, P., Alfieri, D., Roycroft, B., Bain, J., Pavone, F., Cicchi, R., Teare, J., Polo, F., Arbide, N., Velasco, J. and Picon, A., “Multimodal photonic endoscope to improve in vivo colon cancer diagnosis and clinical decision support,” 25th Int. Congr. E.A.E.S. (2017). [Abstract]
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